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Nature ecology & evolution
Published

A single-cell atlas of the bobtail squid visual and nervous system highlights molecular principles of convergent evolution

Authors

Daria Gavriouchkina, Yongkai Tan, Elise Parey, Fabienne Ziadi-Künzli, Yuko Hasegawa, Laura Piovani, Lin Zhang, Chikatoshi Sugimoto, Nicholas Luscombe, Ferdinand Marlétaz, Daniel S Rokhsar

Abstract

Nat Ecol Evol. 2025 Jun 6. doi: 10.1038/s41559-025-02720-9. Online ahead of print.

ABSTRACT

The cephalopod and vertebrate visual systems are a textbook example of convergent evolution with unknown molecular underpinnings. Here we characterize 98,537 single-cell transcriptomes in the bobtail squid Euprymna berryi to understand how the cephalopod retina and optic lobes relate to the vertebrate retina. We confirm the overall relative simplicity of the cephalopod retina but identify two related photoreceptor cell subtypes expressing distinct r-opsins. By contrast, the adult optic lobe contains a diverse repertoire of neuronal and glial cell types, with a predominance of dopaminergic neurons. We show that cephalopod-specific gene duplicates probably contributed to this cell type diversification. Comparing neuronal cell population in the optic lobes of hatchlings and adults, we reveal a switch towards dopaminergic neurotransmitter usage with age, indicative of a maturation process. We further identify an FMRF-amide-based retrograde signal from the optic lobe towards the retina that supports the functional analogy of the cephalopod optic lobe cortex and the vertebrate inner retina in visual signal processing from a molecular standpoint. Finally, comparative analyses with vertebrate and arthropod cells suggest a scenario in which two photoreceptor types and two neuronal populations may have already been present in the eye of the bilaterian ancestor.

PMID:40481147 | DOI:10.1038/s41559-025-02720-9

UK DRI Authors

Dr Daria Gavriouchkina

Facility Manager, Single Cell and Spatial Omics Facility

Facility Manager, Single Cell and Spatial Omics Facility

Dr Daria Gavriouchkina